TEENA: an integrated web server for Transposable Element ENrichment Analysis

Step1: Choose species and assembly

Step2: Upload genomic interval file

Demo BED file for download: GATA3_hg38.bed
Maximum file size for upload is: 20Mb
More description about BED format can be found here. Only the first 3 columns are used for analysis.

Step3: Parameter settings

Use mid-point for overlapping (otherwise use whole region)
Yes No

Exclude genomic gaps (i.e. the Ns in the reference genome)
Yes No

Exclude promoter regions (defined as +/- 500 bp from TSSs)
Yes No

Step4: Job submission

It usually takes 2-3 minutes to finish. After submission, you will be redirected to the results page.

Starting Analysis...

Please wait while we prepare your analysis.

You will be redirected to the results page shortly.

We have updated TEENA to fix an issue due to firewall blockage. It can run smoothly now.